Here’s a list of known data sources that are no longer available during the shutdown:
NOAA
all the below redirect to https://government-shutdown.noaa.gov and thus cause errors in the function calls
-
rnoaa::ncdc()- National Climatic Data Center API -
rnoaa::ersst()- NOAA Extended Reconstructed Sea Surface Temperature (ERSST) data -
rnoaa::lcd()- Local Climitalogical Data -
rnoaa::homr()- Historical Observing Metadata Repository (HOMR) station metadata -
rnoaa::swdi()- severe weather data inventory
Other data sources in rnoaa are still working as they work with FTP servers that are still up
USGS
ITIS
The ITIS service is completely down, affecting
- the entire
ritisR package - the ITIS functionality inside the
taxizepackage
Checkout taxizedb for working with database dumps - of course you’ll have already had to download ITIS database dump 
BISON
USGS’s BISON service is down
Affects the rbison package
Entrez
appears to be unaffected (I guess b/c NIH deemed important enough to keep opn), anyone having problems?
NASA
any NASA data down?
